How to prepare nature microbiology article types an article for submission Microbiology Society
How to prepare nature microbiology article types an article for submission Microbiology Society
In cases where images are entirely unidentifiable and there are no details on individuals reported within the article, consent for publication of images may not be required. The final decision on whether consent to publish is required lies with the Editor. The methods should be comprehensive and provide sufficient detail to allow your work to be repeated. Software used should be consistently cited and its version and parameters included. Indicate the suppliers of chemicals and equipment if this may affect the results; if there are name changes between your work and submission, please ensure this is clearly indicated. We do not need suppliers’ addresses. We also recommend that you include a section on authorship and contributions using the CRediT taxonomy from CASRAI, which aims to provide transparency to the contributions of researchers to published work, improving attribution, credit, and accountability. The table below summarises the roles currently included in the taxonomy: if you feel that there are additional roles which should be added, please get in touch with our Director of Publishing , who will pass the information on to CASRAI for consideration. We follow the ICMJE guideline for clinical trials registration in line with the ICMJE and WHO declarations. For submission of a randomised controlled trial, please provide the registration number of the trial and the name of the trial registry in the last line of the paper’s structured abstract. Articles that report clinical trial data should contain a data sharing statement, indicating: We use the Vancouver style. If your article is accepted for publication, your reference lists and citations will be reformatted to fit. Ideally, references should include a DOI to facilitate this, and to allow us to create reference links in published articles. Repositories : if your article contains new sequence data, please include the accession number on the title page. More information about sequences is in the Data section below. **Free to read for 30 days after publication. Open Access available. For the International Journal of Systematic and Evolutionary Microbiology , you must provide evidence that types are deposited in two recognised culture collections in two different countries without restrictions. If there are any Material Transfer Agreements associated with the certificates of deposit, please include this information during submission. Clinical trials that begin enrolling participants on or after 1 January 2019 must include a data sharing plan in the trial’s registration if they wish to publish results. Any changes to the plan after registration must be disclosed in the data sharing statement when published. Microbiology encourages graphical abstracts to be included in all article types. If you are using a strain which has been obtained from someone else, you must provide us with confirmation that you had permission to make use of the strain in the research you are reporting in the article. Corresponding author : the email address for the corresponding author. It is permissible to include the names of more than one author as corresponding author, but a single author must act as the point of communication during the peer review process. You should use absorbance for the quantity log in UV and visible absorption spectrophotometry of samples in which there is negligible scattering or reflection of light. If there is considerable scattering, as in spectrophotometric measurements of microbial biomass, use optical density or attenuance . Whenever A, OD or D is used, you need to specify the wavelength of the incident light with subscript numbers , the path length of the cell or cuvette and the make and model of the spectrophotometer, and the sample dilution and the diluent. Readings obtained with instruments designed for turbid samples, such as nephelometers or Klett meters, should be reported in appropriate units. You may wish to have your article edited before you submit it for peer review, or during revision. This is not compulsory but it may help Editors and reviewers to fully understand your article. Where appropriate, you may wish to provide a combined Results and Discussion section. Authors providing supporting external data are encouraged to include a Data Summary describing this, including the DOI and/or accession numbers, and the associated URL. Many language-editing services are available, but we have partnered with Editage to provide publication-focused editing services to our authors at a 15% discount. To take advantage of this offer visit our Editage page , or if you’re an existing Editage customer, please use the code MICSOC10. Author names : first name and family name in full, with the author for correspondence and any authors of equal contribution clearly indicated. The Society does not impose a set form on authors' names, and will honour each individual's preference for how their name appears in their published article. Our journals support CRediT , as described in the ‘Author Statements’ section below. To help Editors and reviewers assess the reproducibility of your work, include the number of times your experiment was repeated and the type of result shown . If results are expressed as percentages, the absolute value corresponding to 100% should be stated. Indicate the variability of the results statistically wherever possible; when error terms are given, state the measure of dispersion and the number of observations. Specify the statistical techniques you used, and where necessary either describe the technique or provide a reference. If you wish to acknowledge an individual, please make sure that the person consents to be named in your article. Give concentrations as g l −1 , etc. The term ‘%’ should be defined as ‘w/v’, ‘v/v’ or ‘w/w’, to avoid ambiguity. As a rule, you should only use an abbreviation if it will appear more than three times in your text. You should always define your abbreviations the first time they are mentioned in the Abstract and in the main text of your article, as well as in any figure or table legends. Common terms such DNA do not need to be defined. Microbial Genomics has a mandatory open data policy. Authors are required to provide access to all supporting data at submission, including sequencing data, which have either led to the conclusions drawn in their article or allow the procedure described in the article to be repeated. For all other journals, open data is optional and can be deposited as described in the section on Supporting data above. Generic names are singular Latin nouns and do not take a plural form. You should avoid the use of a generic name alone when the reference is to the members of the genus. Thus, ‘The strains of Salmonella are…’ not ‘The Salmonella are…’. The latter implies more than one generic name Salmonella. Examples of non-financial conflicts of interest might include political, religious or intellectual conflicts. Figures will be required as separate files for publication at revision stage. We support figures supplied in PDF, GIF, TIFF, EPS, JPEG, PNG, SVG, and PPT. It is important to ensure that all figures are suitably high resolution for publication, usually no lower than 300 dpi. This means that line thicknesses, symbol sizes, and text should be sufficient to allow for the figure to be scaled down to fit comfortably on an A4 page. You can use our consent form to obtain consent for publication, or a consent form from your own institution or region if appropriate. The consent form must state that the details/images/videos will be freely available on the internet or in print and may be seen by the general public. The consent form must be submitted with the article and will be treated confidentially. State the objectives of the work and cite previous relevant work to set the scene. The Introduction should not constitute a full review, but should be sufficiently detailed to allow readers to interpret the rest of the article. Although names of genera and higher categories may stand alone to refer to the taxa with which they are associated, specific and subspecific epithets may not. A generic name followed by a specific epithet should be spelled out the first time it is used in the text; subsequently, it may be abbreviated to its capitalised initial letter if the context makes the meaning clear. In lists of names of species of the same genus, the genus name may be abbreviated after its first use for subsequent species in the list. If there are several generic names in the text with the same initial letter, the names should be spelled out at each occurrence. Some of our journals have one or two specialist article types, as described here. Take care to distinguish between genes and the proteins that they encode .
Articles reporting new sequence data must include an accession number from one of the public databases and you must adhere to the relevant deposition criteria for the database. If a sequence is not yet available, the database flat file or the NCBI Sequin file should be made available for review; you can choose to do this through figshare if you prefer. These files will not be published, but they are essential for reviewing the article. If an article is accepted, the data must be made publicly available prior to publication, Both Microbial Genomics and International Journal of Systematic and Evolutionary Microbiology require that all sequence data be made publicly available prior to submission. Title : a concise statement of the contents of your article. A title that emphasises the main conclusions, or poses a question, has more impact than one that just describes the nature of the study. Genomic data may have restrictions imposed on use in third-party publications even if the data is available on a public repository. If you are using sequence data from public repositories, you should adhere to the principles on fair use laid out in the Fort Lauderdale and Toronto agreements; and for pathogen sequence data, the WHO Code of Conduct for open and timely sharing of pathogen genetic sequence data during outbreaks of infectious disease . This policy does not preclude analyses of aggregated public data, however detailed analyses of data from individual unpublished sources should adhere to fair use principles. The origin of third-party data should be clearly documented and appropriate credit given via citations or acknowledgements. nature microbiology article types Please organise your Results section with enough subheadings to allow readers to gain a clear picture of the work. The section should indicate the key questions being addressed, the outcomes of experiments, and any interpretation of these results. You may include here any figures and tables within the body of the text to assist Editors and reviewers in assessing the work more easily. You must use the correct name of all organisms referenced in your article, conforming with international rules of nomenclature: You must declare any potential conflicts of interest in the article. A conflict of interest may exist when your interpretation of the results or presentation of information may be influenced by your personal or financial relationship with other people or organisations. If no conflict exists, include the line "The author declare that there are no conflicts of interest " under the Conflicts of interest heading. Please use SI units throughout your article where possible. If non-SI units are used, the equivalent in SI units should also be given at the first mention, e.g. 1 p.s.i. . If your article includes a mathematical model, you should provide appropriate details at submission so the reviewers and Editor can assess the work. If your article is accepted for publication you can choose to make your model publicly available through a data repository or as a supplementary data file. * All eligible for immediate Open Access in our subscription journals, or are always Open Access if published in Microbial Genomics or Access Microbiology . Microarray and other genome-wide studies We also have an optional open methodology policy supported by protocols.io . You can deposit you protocols with them privately, then add the DOI and link to your article. This will allow the reviewers and Editors to see your protocol during the peer review process. When your article is published the protocol becomes public too, and it will be automatically updated to link to your published article. If your article reports on MLST analyses, the MLST gene sequence data for all samples presented in the article must be available. Follow the recommendations of the International Union of Pure and Applied Chemistry for chemical nomenclature, and those of the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology and the IUPAC–IUBMB Joint Commission on Biochemical Nomenclature for enzyme nomenclature . Many microorganisms are known by their vernacular names as well as by their scientific names. There are no rules governing the use of vernacular names and it is often convenient to use them; you should feel free to do so, provided you have correctly identified the microorganism the first time it is mentioned in your article. You may also add synonyms or vernacular names in parentheses when the name is first mentioned, if you wish to do so. If the strains under study are involved in a patent process, please make sure this is clearly indicated both in the article and in your submission cover letter. Strains other than the type strain should carry the superscript ‘PP’ if a patent is pending and ‘P’ if a patent has been issued. Your discussion should not be too long. Compare your results with previous findings without revisiting your results in full, and use subheadings where appropriate to highlight the points under discussion. It may be helpful to list the main conclusions at the end. Please note that language editing does not guarantee that your article will be sent out for peer review or accepted for publication. Over 120 institutions now operate a fee-free and frictionless OA experience for their researchers via the Society’s Publish and Read deal. Learn how institutions are benefiting and how we can operate fee free OA in your institution. If your article includes details, images, or videos relating to an individual person, you will need to have evidence of written informed consent for the publication of these details. Consent for publication must be obtained from the person, or their parent or legal guardian in the case of children under 18. If the person has died, consent for publication must be obtained from their next of kin. For radioactivity, the preferred unit is becquerels . We have partnered with figshare to support our authors in making their research as open as possible. If you would like to deposit your data in our figshare account, please contact the Editorial Office using the relevant journal email address and they will assist you. If you prefer to provide supporting data as a supplementary material file associated with your article, please supply a single separate PDF file to be incorporated into the system-generated PDF. Excel files are also acceptable. Keywords : between three and six keywords that will make your article easily searchable. The tables below provide summary information about the various article types considered for publication in Microbiology Society journals. Templates for all article types can be found on our Forms and templates page . All Microbiology Society journals have a format-free submission policy for new manuscripts and therefore these templates are not mandatory on initial submission. For more information on our format-free submission policy, please see the Submit an article page. If you need further guidance, please contact the Editorial Office for the relevant journal: Microbial Genomics is a mandatory open data journal and as such asks authors to always include a section describing all supporting external data. If you are making use of data from ongoing sequencing projects, you must follow the guidelines set by the project and give appropriate acknowledgement of the data source. You should show evidence that you have discussed your findings with the scientists responsible for the sequencing programme and that the organisation has approved what is being submitted. Please include all pertinent information for each reference, e.g. authors, year, article/book title, journal/book name, editors, volume, page/article number, DOI. Microbial Genomics has partnered with Microreact , a free platform developed in the David Aanensen Research Group at Imperial College London and The Centre for Genomic Pathogen Surveillance, which provides interactive querying of the data via trees, maps, timelines and tables. Data deposited with Microreact is published in Microbial Genomics via a permanent web link. Insertion sequences should be named as given in the ISfinder Database . Join the Microbiology Society and become part of the largest microbiology community in Europe. Members receive a range of benefits including a discount on the Open Access fee when publishing with our journals. Use relative molecular mass rather than ‘molecular weight’. Alternatively, use molecular mass with values quoted in daltons . If your article reports on insertion sequences, whether stand-alone or as part of larger sequencing projects, you should deposit the relevant information in the ISfinder Database and provide the attribution number as part of your submitted article. Examples of potential financial conflicts of interest include: We encourage you to deposit important strains in a recognised culture collection and to refer to the collection and strain number in the article, in line with the requirements of the Bacteriological Code : “In the case of description of new species and subspecies the culture collection number of at least two publicly accessible service collections in different countries where a subculture of the type strain has been deposited must be given” – Rule 27. How to prepare nature microbiology article types an article for submission Microbiology SocietyHow to prepare nature microbiology article types an article for submission Microbiology Society List your references at the end of the article, numbered in the order that they appear in the text. All listed references must be cited in the text, tables, or figure legends. search search account_circle shopping_cart Journals Microbiology Journal of General Virology Journal of Medical Microbiology Microbial Genomics International Journal of Systematic and Evolutionary Microbiology Access Microbiology JMM Case Reports Browse Collections About us The Microbiology Society Why publish? Joining our Editorial Boards Article and journal metrics Information for authors Prepare an article Submit an article Forms and templates Open Access rates Are you eligible for fee-free Open Access? 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For standard research articles, please follow the outline below. You can also find a brief description of article types and their structures at the end of this section. Affiliation : the name and address of the institution where the work was done, and current addresses of authors who have since moved. For compound units , use μg ml −1 not μg/ml. An Acknowledgements section is not compulsory. However, if materials and results were obtained from outside the authors’ laboratories , this must be acknowledged. Figures and tables should be broadly comprehensible without reference to the text, and add information to the article. Articles of the types described here are published in all Microbiology Society journals. The word and reference counts in the table are indicative, but not restrictive. For Research Articles, Journal of Medical Microbiology mandates a structured abstract that includes the headings: Introduction, Hypothesis/Gap Statement, Aim, Methodology, Results, and Conclusion. The abstract should, if possible, introduce the subject in the first sentence and present the main conclusion in the last sentence. References should not be cited, and any abbreviations used must be defined. Describe in detail the funding sources that supported this work, including the names of funding bodies and grant numbers. Any authors who are associated with specific funding sources should be named. You must also state whether anyone employed by the funders, other than the authors, played any role in the study or in the preparation of the article or decision to publish; these persons need to be named and their role described. If you did not receive funding for the work, include the line "This work received no specific grant from any funding agency" under the Funding information heading. Any experimental work with humans or animals must include a statement that the Ethical Committee of the institution in which the work was done has approved the work. This includes research which uses samples obtained through routine diagnostic procedures or treatments. what is the general conclusion of the nature vs nu